Returns pathways unique to query and reference in a pairwise alignment.
Usage
uniquePathways(object)
# S4 method for class 'ConsortiumMetabolismAlignment'
uniquePathways(object)Arguments
- object
A ConsortiumMetabolismAlignment object of type
"pairwise".
Methods (by class)
uniquePathways(ConsortiumMetabolismAlignment): Unique pathways from a pairwise ConsortiumMetabolismAlignment
Examples
cm1 <- synCM("comm_1", n_species = 3, max_met = 5)
cm2 <- synCM("comm_2", n_species = 4, max_met = 6)
cma <- align(cm1, cm2)
uniquePathways(cma)
#> $query
#> # A tibble: 9 × 2
#> consumed produced
#> <chr> <chr>
#> 1 met1 met2
#> 2 met4 met2
#> 3 met5 met2
#> 4 met1 met3
#> 5 met3 met4
#> 6 met1 met5
#> 7 met2 met5
#> 8 met3 met5
#> 9 met4 met5
#>
#> $reference
#> # A tibble: 11 × 2
#> consumed produced
#> <chr> <chr>
#> 1 met2 met1
#> 2 met5 met1
#> 3 met6 met1
#> 4 met6 met2
#> 5 met2 met3
#> 6 met6 met3
#> 7 met6 met4
#> 8 met6 met5
#> 9 met2 met6
#> 10 met4 met6
#> 11 met5 met6
#>