Generate Random Synthetic Consortium Metabolism

A function that creates synthetic data suitable for demonstration purposes of the ramen package.

Usage

synCM(
  name,
  n_species,
  max_met,
  scale_fac = 2,
  seed = FALSE,
  dead_ends = FALSE,
  cm = TRUE
)

Arguments

name

Character string giving the desired name of the community.

n_species

Number of species in the community

max_met

Maximum number of metabolites in the communities

scale_fac

Scaling factor

seed

Seed for reproducibility

dead_ends

Logical value to toggle dead ends in data

cm

Logical value to toggle return of ConsortiumMetabolism object or tibble.

Value

List with n_co number of communities.

Examples

synCM("Ex. Community", n_species = 5, max_met = 10)
#> Ex. Community: ConsortiumMetabolism Object
#> Weighted metabolic network with 10 metabolites.