Get Alignment Scores — scores • ramen

Returns the scores from a ConsortiumMetabolismAlignment object.

Usage

scores(object)

# S4 method for class 'ConsortiumMetabolismAlignment'
scores(object)

Arguments

object: A ConsortiumMetabolismAlignment object.

Value

A named list of scores.

Methods (by class)

scores(ConsortiumMetabolismAlignment): Scores from a ConsortiumMetabolismAlignment

Examples

cm1 <- synCM("comm_1", n_species = 3, max_met = 5)
cm2 <- synCM("comm_2", n_species = 4, max_met = 6)
cma <- align(cm1, cm2)
scores(cma)
#> $FOS
#> [1] 0.375
#> 
#> $jaccard
#> [1] 0.15
#> 
#> $brayCurtis
#> [1] 0.07441444
#> 
#> $redundancyOverlap
#> [1] 0.1153846
#> 
#> $coverageQuery
#> [1] 0.375
#> 
#> $coverageReference
#> [1] 0.2
#>