Get the Consortia — consortia • ramen

Returns the consortia data in a tabular format.

Usage

consortia(object)

# S4 method for class 'ConsortiumMetabolism'
consortia(object)

# S4 method for class 'ConsortiumMetabolismAlignment'
consortia(object)

Arguments

object: A ConsortiumMetabolismAlignment object.

Value

For ConsortiumMetabolism objects, returns a tibble with species, metabolite and flux information. For ConsortiumMetabolismSet and ConsortiumMetabolismAlignment objects, returns a list of such tibbles.

A list with the community data.

Methods (by class)

consortia(ConsortiumMetabolism): Get the Community
consortia(ConsortiumMetabolismAlignment): Not applicable for alignments

Examples

cm <- synCM("test", n_species = 3, max_met = 5)
consortia(cm)
#>     met  species      flux
#> 1  met1 DUT1312V -1.178753
#> 2  met2 DUT1312V  1.231698
#> 3  met5 DUT1312V -1.686556
#> 4  met4 DUT1312V  3.573680
#> 5  met3 BSX9691E  3.006446
#> 6  met2 BSX9691E -0.970617
#> 7  met3 MSZ3715I -5.336016
#> 8  met5 MSZ3715I  2.592752
#> 9  met2 MSZ3715I -1.037214
#> 10 met1 MSZ3715I  5.514784