Coerce a ConsortiumMetabolism to a data.frame — as.data.frame,ConsortiumMetabolism-method • ramen

Returns the underlying edge list of a ConsortiumMetabolism as a plain data.frame with three columns: met, species, and flux. Equivalent to as.data.frame(object@InputData[, c("met", "species", "flux")]).

Usage

# S4 method for class 'ConsortiumMetabolism'
as.data.frame(x, row.names = NULL, optional = FALSE, ...)

Arguments

x: A ConsortiumMetabolism object.
row.names: Ignored.
optional: Ignored.
...: Additional arguments (currently unused).

Value

A data.frame with columns met, species, and flux.

Examples

cm <- synCM("demo", n_species = 3, max_met = 5)
head(as.data.frame(cm))
#>    met  species       flux
#> 1 met2 DUO5910U  2.5107857
#> 2 met2 CRP7583I -3.5003419
#> 3 met5 CRP7583I  3.1752836
#> 4 met5 TGH8437W -3.1752836
#> 5 met2 TGH8437W  0.9895562
#> 6 met1 DUO5910U  1.0452324