Compare Species

Compares the metabolisms of two species and outputs a list of tibbles, containing the tibbles intersection, unique, and consistency. As the name suggests, intersection, unique contain the intersection and unique pathways per species compared, while the consistency tibble contains information on whether or not a specie's set of pathways is consistent in all of the consortia in which it is present or not. If all species contain the same edges in all consortia in which they appear, this tibble will be returned with 0 rows. For ConsortiumMetabolismSet objects.

Usage

compareSpecies(object, species)

# S4 method for class 'ConsortiumMetabolismSet'
compareSpecies(object, species)

Arguments

object

A ConsortiumMetabolismSet object.

species

A character vector of species names to compare

Value

A list of tibbles.

Details

This method is currently implemented for ConsortiumMetabolismSet objects. Future versions will extend functionality to ConsortiumMetabolism objects to allow for the analysis of species within a single consortium different alignments.

Methods (by class)

• compareSpecies(ConsortiumMetabolismSet): Compare Species in a ConsortiumMetabolismSet